PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G287600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 274aa    MW: 30164.3 Da    PI: 7.0898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G287600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-1386132354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riNs +++Lr+l+P       +K++Ka+ L ++++ +k+L
  Aqcoe1G287600.1.p  86 KTHSEAERRRRERINSHLNTLRSLVPCT-----EKMDKASLLAEVIDNVKEL 132
                        68*************************8.....8************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.17183132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-1186132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-1487139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1487136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1189138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.6E-4169213No hitNo description
CDDcd048733.86E-6169241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGSSFDWNSG IVFDNDINSR FFVQNLPLSP LGINSGSSHS LPISFPLPPS SSSSLVLDSD  60
KGELVRAPAK LGQKGKTEAK AIAALKTHSE AERRRRERIN SHLNTLRSLV PCTEKMDKAS  120
LLAEVIDNVK ELKRTTTEAC EGFVIPMDVN EVKVEPHKDG VEGLLCIKVS LCCEDRPEIF  180
ADLRQALDTF DLKTLKAEMS TLGGRMKNVF IMSRCIVENI DNAEVRQQIT SSVHQALTSI  240
LDKYSGPEEL SPRMSHSDKR RRISLFDSSS SSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196ERRRRE
2258262KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274955.13e-85PREDICTED: transcription factor bHLH30
RefseqXP_007025402.14e-85Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
TrEMBLA0A061GLQ34e-85A0A061GLQ3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
TrEMBLF6H4593e-85F6H459_VITVI; Putative uncharacterized protein
STRINGVIT_14s0068g01580.t011e-84(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.13e-39basic helix-loop-helix 32